IL_11JJ_158
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 11JJ|1|28|U|1930, 11JJ|1|28|C|1931, 11JJ|1|28|G|2055, 11JJ|1|28|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_158 not in the Motif Atlas
- Homologous match to IL_8GLP_079
- Geometric discrepancy: 0.1339
- The information below is about IL_8GLP_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.3
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|28|C|1926
11JJ|1|28|U|1927
11JJ|1|28|C|1928
11JJ|1|28|A|1929
11JJ|1|28|U|1930
11JJ|1|28|C|1931
11JJ|1|28|A|1932
11JJ|1|28|G|1933
*
11JJ|1|28|C|2053
11JJ|1|28|U|2054
11JJ|1|28|G|2055
11JJ|1|28|G|2056
11JJ|1|28|A|2057
11JJ|1|28|G|2058
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 14
- 60S ribosomal protein L14
- Chain 20
- Large ribosomal subunit protein eL20
- Chain 40
- Large ribosomal subunit protein eL40
- Chain L9
- 60S ribosomal protein L9
- Chain bb
- Large ribosomal subunit protein uL13
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