IL_11JJ_159

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

11JJ|1|28|C|1935, 11JJ|1|28|A|2041, 11JJ|1|28|U|2044, 11JJ|1|28|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_159 not in the Motif Atlas

Homologous match to IL_8GLP_080

Geometric discrepancy: 0.0723

The information below is about IL_8GLP_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|G|1933
11JJ|1|28|A|1934
11JJ|1|28|C|1935
11JJ|1|28|C|1936
11JJ|1|28|C|1937
11JJ|1|28|C|1938
11JJ|1|28|A|1939
11JJ|1|28|G|1940
11JJ|1|28|A|1941
11JJ|1|28|A|1942
11JJ|1|28|A|1943
11JJ|1|28|A|1944
*
11JJ|1|28|U|2038
11JJ|1|28|G|2039
11JJ|1|28|A|2040
11JJ|1|28|A|2041
11JJ|1|28|A|2042
11JJ|1|28|A|2043
11JJ|1|28|U|2044
11JJ|1|28|G|2045
11JJ|1|28|G|2046
11JJ|1|28|A|2047
11JJ|1|28|U|2048
11JJ|1|28|G|2049
11JJ|1|28|G|2050
11JJ|1|28|C|2051
11JJ|1|28|G|2052
11JJ|1|28|C|2053

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 40

Large ribosomal subunit protein eL40

Chain 6

5S ribosomal RNA; 5S rRNA

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13

Chain ee

Large ribosomal subunit protein eL33