IL_11JJ_163

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

11JJ|1|28|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_163 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.1761

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

11JJ|1|28|G|2001
11JJ|1|28|A|2002
11JJ|1|28|G|2003
11JJ|1|28|U|2004
11JJ|1|28|G|2005
*
11JJ|1|28|C|2014
11JJ|1|28|U|2015
11JJ|1|28|C|2016

Current chains

Chain 28

28S rRNA

Nearby chains

Chain s

60S acidic ribosomal protein P0

Chain t

uL11