IL_11JJ_170

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

11JJ|1|28|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_170 not in the Motif Atlas

Homologous match to IL_8GLP_301

Geometric discrepancy: 0.1738

The information below is about IL_8GLP_301

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

11JJ|1|28|U|2415
11JJ|1|28|G|2416
11JJ|1|28|A|2417
11JJ|1|28|A|2418
11JJ|1|28|C|2419
*
11JJ|1|28|G|2427
11JJ|1|28|A|2428
11JJ|1|28|A|2429

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain 19

60S ribosomal protein L19

Chain 39

60S ribosomal protein L39