IL_11JJ_171
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 11JJ|1|28|A|2512, 11JJ|1|28|A|2513
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_171 not in the Motif Atlas
- Homologous match to IL_8GLP_091
- Geometric discrepancy: 0.0598
- The information below is about IL_8GLP_091
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.4
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 27
Unit IDs
11JJ|1|28|C|2446
11JJ|1|28|U|2447
11JJ|1|28|G|2448
11JJ|1|28|A|2449
11JJ|1|28|G|2450
*
11JJ|1|28|C|2509
11JJ|1|28|G|2510
11JJ|1|28|A|2511
11JJ|1|28|A|2512
11JJ|1|28|A|2513
11JJ|1|28|G|2514
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 34
- 60S ribosomal protein L34
- Chain 37
- 60S ribosomal protein L37
- Chain 39
- 60S ribosomal protein L39
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8
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