IL_11JJ_175

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_175 not in the Motif Atlas

Homologous match to IL_8GLP_096

Geometric discrepancy: 0.0936

The information below is about IL_8GLP_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

11JJ|1|28|C|2589
11JJ|1|28|G|2590
11JJ|1|28|A|2591
11JJ|1|28|U|2592
11JJ|1|28|C|2593
*
11JJ|1|28|G|2752
11JJ|1|28|G|2753
11JJ|1|28|G|2754
11JJ|1|28|A|2755
11JJ|1|28|G|2756

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 27

60S ribosomal protein L27

Chain 34

60S ribosomal protein L34

Chain L8

60S ribosomal protein L8