IL_11JJ_179
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 11JJ|1|28|U|2661, 11JJ|1|28|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_179 not in the Motif Atlas
- Homologous match to IL_8GLP_101
- Geometric discrepancy: 0.0535
- The information below is about IL_8GLP_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 7
Unit IDs
11JJ|1|28|U|2656
11JJ|1|28|G|2657
11JJ|1|28|G|2658
11JJ|1|28|A|2659
11JJ|1|28|A|2660
11JJ|1|28|U|2661
11JJ|1|28|G|2662
*
11JJ|1|28|C|2672
11JJ|1|28|G|2673
11JJ|1|28|A|2674
11JJ|1|28|G|2675
11JJ|1|28|A|2676
11JJ|1|28|G|2677
11JJ|1|28|A|2678
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 19
- 60S ribosomal protein L19
- Chain 27
- 60S ribosomal protein L27
- Chain 30
- 60S ribosomal protein L30
- Chain 34
- 60S ribosomal protein L34
- Chain FF
- 40S ribosomal protein S13
- Chain ff
- 60S ribosomal protein L37a
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