IL_11JJ_195

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_195 not in the Motif Atlas

Geometric match to IL_9PN5_086

Geometric discrepancy: 0.0586

The information below is about IL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

11JJ|1|28|G|3780
11JJ|1|28|C|3781
*
11JJ|1|28|G|3811
11JJ|1|28|C|3812
11JJ|1|28|A|3813
11JJ|1|28|U|3814

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 41

eL41