IL_11JJ_196

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

11JJ|1|28|A|3785, 11JJ|1|28|C|3791, 11JJ|1|28|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_196 not in the Motif Atlas

Homologous match to IL_8GLP_307

Geometric discrepancy: 0.1895

The information below is about IL_8GLP_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.3

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

11JJ|1|28|C|3781
11JJ|1|28|C|3782
11JJ|1|28|A|3783
11JJ|1|28|A|3784
11JJ|1|28|A|3785
11JJ|1|28|U|3786
11JJ|1|28|G|3787
11JJ|1|28|C|3788
11JJ|1|28|C|3789
11JJ|1|28|U|3790
11JJ|1|28|C|3791
11JJ|1|28|G|3792
*
11JJ|1|28|C|3808
11JJ|1|28|G|3809
11JJ|1|28|C|3810
11JJ|1|28|G|3811

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 41

eL41