IL_11JJ_197

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_197 not in the Motif Atlas

Homologous match to IL_9PN5_088

Geometric discrepancy: 0.0845

The information below is about IL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.4

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

12

Unit IDs

11JJ|1|28|G|3895
11JJ|1|28|C|3896
11JJ|1|28|G|3897
11JJ|1|28|G|3898
*
11JJ|1|28|U|4563
11JJ|1|28|A|4564
11JJ|1|28|C|4565

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L3

60S ribosomal protein L3

Chain bb

Large ribosomal subunit protein uL13