IL_11JJ_198

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

11JJ|1|28|A|3901, 11JJ|1|28|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_198 not in the Motif Atlas

Homologous match to IL_8GLP_129

Geometric discrepancy: 0.0798

The information below is about IL_8GLP_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

11JJ|1|28|G|3900
11JJ|1|28|A|3901
11JJ|1|28|A|3902
*
11JJ|1|28|U|4558
11JJ|1|28|A|4559
11JJ|1|28|C|4560
11JJ|1|28|C|4561

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 17

60S ribosomal protein L17

Chain L3

60S ribosomal protein L3