IL_11JJ_202
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 11JJ|1|28|G|4084, 11JJ|1|28|G|4086, 11JJ|1|28|G|4087, 11JJ|1|28|C|4162, 11JJ|1|28|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_202 not in the Motif Atlas
- Homologous match to IL_8GLP_135
- Geometric discrepancy: 0.1077
- The information below is about IL_8GLP_135
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52092.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|28|G|4082
11JJ|1|28|U|4083
11JJ|1|28|G|4084
11JJ|1|28|A|4085
11JJ|1|28|G|4086
11JJ|1|28|G|4087
11JJ|1|28|C|4088
*
11JJ|1|28|G|4161
11JJ|1|28|C|4162
11JJ|1|28|U|4163
11JJ|1|28|C|4164
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 58
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8
- Chain aa
- Large ribosomal subunit protein eL8
- Chain cc
- Large ribosomal subunit protein uL23
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