IL_11JJ_209
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGCU*GAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11JJ_209 not in the Motif Atlas
- Homologous match to IL_9PN5_098
- Geometric discrepancy: 0.0954
- The information below is about IL_9PN5_098
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60246.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
11JJ|1|28|G|4400
11JJ|1|28|G|4401
11JJ|1|28|C|4402
11JJ|1|28|U|4403
*
11JJ|1|28|G|4440
11JJ|1|28|A|4441
11JJ|1|28|U|4442
11JJ|1|28|C|4443
11JJ|1|28|C|4444
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 29
- Large ribosomal subunit protein eL29
- Chain L3
- 60S ribosomal protein L3
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