IL_11JJ_230
3D structure
- PDB id
- 11JJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 11JJ|1|28|C|4757, 11JJ|1|28|U|4758, 11JJ|1|28|A|4764, 11JJ|1|28|G|4870, 11JJ|1|28|C|4871, 11JJ|1|28|G|4873, 11JJ|1|28|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
11JJ|1|28|C|4756
11JJ|1|28|C|4757
11JJ|1|28|U|4758
11JJ|1|28|C|4759
11JJ|1|28|G|4760
11JJ|1|28|G|4761
11JJ|1|28|A|4762
11JJ|1|28|U|4763
11JJ|1|28|A|4764
11JJ|1|28|G|4765
11JJ|1|28|C|4766
*
11JJ|1|28|G|4868
11JJ|1|28|U|4869
11JJ|1|28|G|4870
11JJ|1|28|C|4871
11JJ|1|28|G|4872
11JJ|1|28|G|4873
11JJ|1|28|A|4874
11JJ|1|28|G|4875
11JJ|1|28|A|4876
11JJ|1|28|G|4877
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 14
- 60S ribosomal protein L14
- Chain 20
- Large ribosomal subunit protein eL20
- Chain L6
- 60S ribosomal protein L6
- Chain L9
- 60S ribosomal protein L9
- Chain bb
- Large ribosomal subunit protein uL13
Coloring options: