IL_11JJ_233

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_233 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.147

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

11JJ|1|28|U|4885
11JJ|1|28|C|4886
11JJ|1|28|C|4887
11JJ|1|28|C|4888
*
11JJ|1|28|G|4931
11JJ|1|28|U|4932
11JJ|1|28|C|4933
11JJ|1|28|A|4934

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 14

60S ribosomal protein L14

Chain L6

60S ribosomal protein L6