IL_11JJ_237

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_237 not in the Motif Atlas

Geometric match to IL_7EOG_001

Geometric discrepancy: 0.3506

The information below is about IL_7EOG_001

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

11JJ|1|28|C|4996
11JJ|1|28|G|4997
*
11JJ|1|28|U|5053
11JJ|1|28|C|5054
11JJ|1|28|G|5055

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3