IL_11JJ_238

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

11JJ|1|28|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_238 not in the Motif Atlas

Homologous match to IL_9H3G_143

Geometric discrepancy: 0.1579

The information below is about IL_9H3G_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

11JJ|1|28|G|5000
11JJ|1|28|U|5001
11JJ|1|28|U|5002
*
11JJ|1|28|G|5045
11JJ|1|28|U|5046
11JJ|1|28|C|5047
11JJ|1|28|A|5048
11JJ|1|28|G|5049
11JJ|1|28|C|5050

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3