IL_11JJ_239

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGUACG*UUGAAA

Length

13 nucleotides

Bulged bases

11JJ|1|28|G|5041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_239 not in the Motif Atlas

Homologous match to IL_8GLP_176

Geometric discrepancy: 0.0617

The information below is about IL_8GLP_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

11JJ|1|28|U|5003
11JJ|1|28|C|5004
11JJ|1|28|G|5005
11JJ|1|28|U|5006
11JJ|1|28|A|5007
11JJ|1|28|C|5008
11JJ|1|28|G|5009
*
11JJ|1|28|U|5039
11JJ|1|28|U|5040
11JJ|1|28|G|5041
11JJ|1|28|A|5042
11JJ|1|28|A|5043
11JJ|1|28|A|5044

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 31

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3

Chain W

Ribosomal protein L24