IL_11JJ_242

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

11JJ|1|58|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_242 not in the Motif Atlas

Homologous match to IL_8GLP_187

Geometric discrepancy: 0.0822

The information below is about IL_8GLP_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

11JJ|1|58|U|64
11JJ|1|58|A|65
11JJ|1|58|A|66
*
11JJ|1|58|U|92
11JJ|1|58|C|93
11JJ|1|58|G|94
11JJ|1|58|A|95

Current chains

Chain 58

5.8S rRNA

Nearby chains

Chain 26

60S ribosomal protein L26

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain 35

60S ribosomal protein L35

Chain 37

60S ribosomal protein L37