IL_11JJ_249

3D structure

PDB id

11JJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with eEF2,IFRD2 and LARP1,40S-head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

11JJ|1|6|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11JJ_249 not in the Motif Atlas

Homologous match to IL_8QYX_171

Geometric discrepancy: 0.0596

The information below is about IL_8QYX_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

11JJ|1|6|G|82
11JJ|1|6|A|83
11JJ|1|6|U|84
11JJ|1|6|G|85
*
11JJ|1|6|C|92
11JJ|1|6|G|93
11JJ|1|6|C|94

Current chains

Chain 6

5S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 20

Large ribosomal subunit protein eL20

Chain 28

Large subunit ribosomal RNA; LSU rRNA

Chain L7

60S ribosomal protein L7