IL_11KH_002
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 11KH|1|18|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_002 not in the Motif Atlas
- Geometric match to IL_8GLP_190
- Geometric discrepancy: 0.1021
- The information below is about IL_8GLP_190
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
11KH|1|18|C|37
11KH|1|18|A|38
11KH|1|18|A|39
11KH|1|18|A|40
*
11KH|1|18|U|514
11KH|1|18|G|515
11KH|1|18|A|516
11KH|1|18|C|517
11KH|1|18|G|518
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
- Chain SS
- 40S ribosomal protein S24
Coloring options: