IL_11KH_012

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_012 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.2477

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

11KH|1|18|C|188
11KH|1|18|U|189
11KH|1|18|G|190
11KH|1|18|A|191
11KH|1|18|C|192
*
11KH|1|18|G|207
11KH|1|18|G|208
11KH|1|18|A|209
11KH|1|18|U|210
11KH|1|18|G|211

Current chains

Chain 18

18S rRNA

Nearby chains

Chain S8

40S ribosomal protein S8