IL_8GLP_204

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_204 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1912

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8GLP|1|S2|C|188
8GLP|1|S2|U|189
8GLP|1|S2|G|190
8GLP|1|S2|A|191
8GLP|1|S2|C|192
*
8GLP|1|S2|G|207
8GLP|1|S2|G|208
8GLP|1|S2|A|209
8GLP|1|S2|U|210
8GLP|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8