IL_11KH_042

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_042 not in the Motif Atlas

Homologous match to IL_9PN5_182

Geometric discrepancy: 0.1617

The information below is about IL_9PN5_182

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

11KH|1|18|A|922
11KH|1|18|G|923
*
11KH|1|18|C|1019
11KH|1|18|A|1020
11KH|1|18|U|1021
11KH|1|18|U|1022

Current chains

Chain 18

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S13

Chain VV

40S ribosomal protein S27

Chain WX

40S ribosomal protein S15a