IL_74641.4

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_3D0U_004	3D0U	0.3587	Major groove platform; stack outside cWW	A	Lysine riboswitch	C	35	A	36	U	37	C	38	*	G	51	G	52	cWW		cSH		cWW
2	IL_3DIL_004	3DIL	0.4193	Major groove platform; stack outside cWW	A	Lysine riboswitch	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
3	IL_1NTA_003	1NTA	0.3460	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW
4	IL_7A0S_023	7A0S	0.3157	Major groove platform; stack outside cWW	X	LSU rRNA	U	857	G	858	U	859	U	860	*	A	944	G	945	cWW				cWW
5	IL_6N5P_003	6N5P	0.1152	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	94	G	95	A	96	C	97	*	G	44	G	45	cWW			tSH	cWW
6	IL_8GLP_235	8GLP	0.0708	Major groove platform; stack outside cWW (H)	S2	SSU rRNA	C	1019	A	1020	U	1021	U	1022	*	A	922	G	923	cWW				cWW
7	IL_9PN5_182	9PN5	0.0518		B5	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW				cWW
8	IL_9H3G_197	9H3G	0.0000		h1	SSU rRNA	C	963	A	964	U	965	U	966	*	A	866	G	867	cWW				cWW
9	IL_9DFE_049	9DFE	0.1318	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
10	IL_7A0S_046	7A0S	0.1524	Major groove platform; stack outside cWW	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW
11	IL_8GLP_089	8GLP	0.1496		L5	LSU rRNA	G	2406	G	2407	U	2408	U	2409	*	A	2783	C	2784	cWW				cWW
12	IL_4V9F_050	4V9F	0.1517	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
13	IL_9AXU_058	9AXU	0.1489		2	LSU rRNA	G	1526	G	1527	U	1528	U	1529	*	A	1890	C	1891	cWW				cWW
14	IL_9H3G_065	9H3G	0.1560		A	LSU rRNA	G	1501	G	1502	U	1503	U	1504	*	A	1837	C	1838	cWW				cWW
15	IL_9E6Q_052	9E6Q	0.1629		1	LSU rRNA	G	1439	G	1440	U	1441	U	1442	*	A	1745	C	1746	cWW				cWW
16	IL_8B0X_109	8B0X	0.1577	Major groove platform; stack outside cWW (H)	a	LSU rRNA	G	1312	G	1313	U	1314	U	1315	*	A	1605	C	1606	cWW				cWW
17	IL_4WF9_049	4WF9	0.1794	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
18	IL_4V9F_008	4V9F	0.1990	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
19	IL_9E6Q_008	9E6Q	0.1993		1	LSU rRNA	C	255	A	256	A	257	A	258	*	U	286	G	287	cWW			ntSH	cWW
20	IL_4WF9_064	4WF9	0.2580	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
21	IL_4V9F_061	4V9F	0.2833	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
22	IL_7A0S_061	7A0S	0.2775	Major groove platform; stack outside cWW	X	LSU rRNA	G	1683	G	1684	A	1685	A	1686	*	U	1976	C	1977	cWW			tSH	cWW
23	IL_8OI5_078	8OI5	0.3057		1	LSU rRNA	G	1894	G	1895	A	1896	A	1897	*	U	2314	C	2315	cWW			tSH	cWW
24	IL_9AXU_072	9AXU	0.2779		2	LSU rRNA	G	1953	G	1954	A	1955	A	1956	*	U	2424	C	2425	cWW			tSH	cWW
25	IL_8GLP_304	8GLP	0.2671		L5	LSU rRNA	G	2847	G	2848	A	2849	A	2850	*	U	3840	OMC	3841	cWW			tSH	cWW
26	IL_9H3G_085	9H3G	0.2554		A	LSU rRNA	G	1900	G	1901	A	1902	A	1903	*	U	2334	OMC	2335	cWW			tSH	cWW
27	IL_9PN5_074	9PN5	0.2768		A1	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
28	IL_9E6Q_063	9E6Q	0.2676		1	LSU rRNA	G	1810	G	1811	A	1812	A	1813	*	U	2114	OMC	2115	cWW			tSH	cWW
29	IL_8B0X_125	8B0X	0.2630		a	LSU rRNA	G	1668	G	1669	A	1670	A	1671	*	U	1997	C	1998	cWW			tSH	cWW
30	IL_9DFE_065	9DFE	0.2415	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
31	IL_8B0X_030	8B0X	0.1851		A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
32	IL_4LFB_027	4LFB	0.1777	Major groove platform; stack outside cWW	A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
33	IL_1KUQ_001	1KUQ	0.1961	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	U	50	G	51	A	52	C	53	*	G	18	A	19	cWW		ncSH	tSH	cWW
34	IL_4QLM_004	4QLM	0.2560	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	91	G	92	U	93	C	94	*	G	39	G	40	cWW			tSH	cWW
35	IL_4QK9_003	4QK9	0.2422	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
36	IL_4W90_004	4W90	0.2154	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUU*AC	8
GGAA*UC	8
CAUU*AG	3
GGAA*U(OMC)	3
UGAC*GA	3
CGUC*GG	3
CAUC*GG	2
CUUC*GG	1
UGUU*AG	1
CGAC*GG	1
GUUU*AC	1
CGAA*UG	1
CAAA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*	16
GU*	12
AU*	5
UU*	2
AA*	1

Release history

Release	4.10	4.11	4.12
Date	2026-05-20	2026-06-17	2026-07-15
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_74641.4 Version IL_74641.4 of this group appears in releases 4.10 to 4.12 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_74641.4 Version IL_74641.4 of this group appears in releases 4.10 to 4.12

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Csv

Json