IL_11KH_046
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_046 not in the Motif Atlas
- Homologous match to IL_9PN5_186
- Geometric discrepancy: 0.0779
- The information below is about IL_9PN5_186
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
11KH|1|18|G|942
11KH|1|18|U|943
11KH|1|18|A|944
11KH|1|18|U|945
*
11KH|1|18|A|981
11KH|1|18|G|982
11KH|1|18|A|983
11KH|1|18|C|984
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain AS
- 40S ribosomal protein S3a
- Chain GG
- Small ribosomal subunit protein uS11
- Chain L8
- 60S ribosomal protein L8
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