IL_11KH_047
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 11KH|1|18|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_047 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.2452
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
11KH|1|18|G|952
11KH|1|18|C|953
11KH|1|18|U|954
11KH|1|18|A|955
11KH|1|18|G|956
*
11KH|1|18|C|967
11KH|1|18|U|968
11KH|1|18|U|969
11KH|1|18|G|970
11KH|1|18|G|971
11KH|1|18|A|972
11KH|1|18|C|973
11KH|1|18|C|974
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS
- 40S ribosomal protein S3a
- Chain GG
- Small ribosomal subunit protein uS11
- Chain IF
- IFRD2
Coloring options: