Motif IL_71972.2 Version IL_71972.2 of this group appears in releases 4.7 to 4.15

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7	break		8		9		10		11		12	1-5	1-12	2-11	4-11	5-10	5-12	6-9	7-8
1	IL_6UFH_001	6UFH	0.2157	1	Kink-turn	A	RNA (167-MER)	C	3	A	4	U	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27	ncsS	cWW	ntsS	tSH			tHS	cWW
2	IL_9L6Y_001	9L6Y	0.2104	1	Kink-turn	B	CS2 RNA	C	21	C	22	A	23	G	25	A	26	C	27	G	28	*	C	6	A	7	G	8	A	9	G	10	csS	cWW	ntsS	ntSH			ncWWa	cWW
3	IL_4WF9_004	4WF9	0.1997	1	Kink-turn	X	LSU rRNA	C	97	U	98	U	99	G	101	A	102	U	103	C	104	*	G	81	G	82	G	83	A	84	G	85		cWW	ntsS	ntSH	ntSs		tHS	cWW
4	IL_9DFE_004	9DFE	0.1288	1	Kink-turn	1A	LSU rRNA	C	97	G	98	U	99	G	102	A	103	U	104	C	105	*	G	81	G	82	G	83	A	84	G	85		cWW	tsS	tSH	ntHS		tHS	cWW
5	IL_6UFG_001	6UFG	0.0999	1	Kink-turn	A	RNA (166-MER)	C	3	A	4	U	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27		cWW	ntsS	tSH			tHS	cWW
6	IL_6UFM_001	6UFM	0.0000	1	Kink-turn	B	RNA (98-MER)	C	3	G	4	A	5	G	7	A	8	U	9	C	10	*	G	23	G	24	G	25	A	26	G	27		cWW	tsS	tSH			tHS	cWW
7	IL_4GXY_005	4GXY	0.1621	1	Kink-turn	A	Cobalamin riboswitch	C	139	G	140	A	141	G	143	A	144	U	145	C	146	*	G	82	G	83	G	84	A	85	G	86	ncsS	cWW	ntsS	tSH			tHS	cWW
8	IL_9H3G_202	9H3G	0.1477	1	Kink-turn	h1	SSU rRNA	C	911	U	912	U	913	G	915	A	916	U	917	U	918	*	G	896	U	897	C	898	A	899	G	900	ncsS	cWW	tsS	tSH		tSs		ncWW
9	IL_8GLP_240	8GLP	0.1886	1	Kink-turn	S2	SSU rRNA	C	967	U	968	U	969	G	971	A	972	C	973	C	974	*	G	952	C	953	U	954	A	955	G	956	ncsS	cWW		ntSH	ntHS			cWW
10	IL_8B0X_034	8B0X	0.2261	1	Kink-turn	A	SSU rRNA	C	699	G	700	U	701	G	703	A	704	G	705	A	706	*	U	684	G	685	U	686	A	687	G	688		cWW	ntsS	tSH	tHW	tSs	tHS	cWW
11	IL_9E6Q_004	9E6Q	0.2592	1	Kink-turn	1	LSU rRNA	C	89	U	90	U	91	G	93	A	94	A	95	C	96	*	G	73	G	74	U	75	A	76	G	77		cWW		tSH	tHW		tHS	cWW
12	IL_4V9F_004	4V9F	0.2617	1	Kink-turn	0	LSU rRNA	C	93	G	94	A	95	G	97	A	98	A	99	C	100	*	G	77	G	78	G	79	A	80	G	81		cWW	ntsS	tSH	ntHS		tHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUCGAUC*GGGAG	2
CCAUGACG*CAGAG	1
CUUUGAUC*GGGAG	1
CGUGGAUC*GGGAG	1
CGACGAUC*GGGAG	1
CGAGGAUC*GGGAG	1
CUUGGAUU*GUCAG	1
CUUGGACC*GCUAG	1
CGUAGAGA*UGUAG	1
CUUAGAAC*GGUAG	1
CGAAGAAC*GGGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUCGAU*GGA	2
CAUGAC*AGA	1
UUUGAU*GGA	1
GUGGAU*GGA	1
GACGAU*GGA	1
GAGGAU*GGA	1
UUGGAU*UCA	1
UUGGAC*CUA	1
GUAGAG*GUA	1
UUAGAA*GUA	1
GAAGAA*GGA	1

Release history

Release	4.7	4.8	4.9	4.10	4.11	4.12	4.13	4.14	4.15
Date	2026-02-25	2026-03-25	2026-04-22	2026-05-20	2026-06-17	2026-07-15	2026-08-12	2026-09-09	2026-10-07
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn (12)
Basepair signature: cWW-tSS-tSH-L-R-tHS-L-cWW
Heat map statistics: Min 0.10 | Avg 0.22 | Max 0.45

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.267 s