IL_11KH_058

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_058 not in the Motif Atlas

Homologous match to IL_9PN5_199

Geometric discrepancy: 0.1438

The information below is about IL_9PN5_199

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

11KH|1|18|G|1235
11KH|1|18|G|1236
*
11KH|1|18|C|1521
11KH|1|18|A|1522
11KH|1|18|C|1523

Current chains

Chain 18

18S rRNA

Nearby chains

Chain HH

40S ribosomal protein S15

Chain LL

40S ribosomal protein S18