Motif IL_98469.1 Version IL_98469.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-2 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3IWN_001 | 3IWN | 0.4370 | 0 | Minor groove platform | A | Cyclic di-GMP-I riboswitch | G | 89 | A | 90 | U | 91 | * | A | 2 | C | 3 | ncWW | cWW | ||
| 2 | IL_8CRE_447 | 8CRE | 0.5330 | 0 | Minor groove platform | CM | SSU rRNA | C | 1445 | A | 1446 | C | 1447 | * | G | 1163 | G | 1164 | cWW | cWW | ||
| 3 | IL_8GLP_254 | 8GLP | 0.5258 | 0 | Minor groove platform (H) | S2 | SSU rRNA | C | 1521 | A | 1522 | C | 1523 | * | G | 1235 | G | 1236 | cWW | cWW | ||
| 4 | IL_9H3G_214 | 9H3G | 0.5224 | 0 | h1 | SSU rRNA | C | 1462 | A | 1463 | C | 1464 | * | G | 1179 | G | 1180 | cWW | cWW | |||
| 5 | IL_9PN5_199 | 9PN5 | 0.5338 | 0 | B5 | SSU rRNA | C | 1459 | A | 1460 | C | 1461 | * | G | 1178 | G | 1179 | cWW | cWW | |||
| 6 | IL_8B0X_041 | 8B0X | 0.5124 | 0 | A | SSU rRNA | C | 1226 | A | 1227 | C | 1228 | * | G | 953 | G | 954 | cWW | cWW | |||
| 7 | IL_4LFB_038 | 4LFB | 0.2390 | 0 | Minor groove platform | A | SSU rRNA | C | 1226 | A | 1227 | C | 1228 | * | G | 953 | G | 954 | cWW | ntHS | cWW | |
| 8 | IL_8OI5_017 | 8OI5 | 0.1891 | 1 | Minor groove platform (H) | 1 | LSU rRNA | C | 439 | U | 440 | G | 442 | * | C | 487 | G | 488 | cSH | cWW | tHS | cWW |
| 9 | IL_9DFE_027 | 9DFE | 0.1528 | 0 | Minor groove platform | 1A | LSU rRNA | U | 913 | C | 914 | C | 915 | * | G | 862 | A | 863 | cSH | cWW | cWW | |
| 10 | IL_4WF9_032 | 4WF9 | 0.1855 | 0 | Minor groove platform | X | LSU rRNA | U | 958 | C | 959 | C | 960 | * | G | 907 | A | 908 | cSH | cWW | cWW | |
| 11 | IL_4V9F_034 | 4V9F | 0.1722 | 0 | Minor groove platform | 0 | LSU rRNA | U | 1009 | C | 1010 | C | 1011 | * | G | 956 | A | 957 | cSH | cWW | cWW | |
| 12 | IL_7A0S_028 | 7A0S | 0.1312 | 0 | Minor groove platform | X | LSU rRNA | U | 925 | C | 926 | C | 927 | * | G | 875 | A | 876 | ncSH | cWW | cWW | |
| 13 | IL_9PN5_091 | 9PN5 | 0.0000 | 1 | A1 | LSU rRNA | U | 2807 | C | 2809 | C | 2810 | * | G | 2412 | A | 2413 | cSH | cWW | cWW | ||
| 14 | IL_8OI5_096 | 8OI5 | 0.0760 | 1 | Minor groove platform (H) | 1 | LSU rRNA | U | 2779 | C | 2781 | C | 2782 | * | G | 2390 | A | 2391 | cSH | cWW | cWW | |
| 15 | IL_9AXU_088 | 9AXU | 0.0704 | 1 | Minor groove platform (H) | 2 | LSU rRNA | U | 2902 | C | 2904 | C | 2905 | * | G | 2500 | A | 2501 | cSH | cWW | cWW | |
| 16 | IL_9H3G_103 | 9H3G | 0.0818 | 1 | A | LSU rRNA | U | 2806 | C | 2808 | C | 2809 | * | G | 2410 | A | 2411 | cSH | cWW | cWW | ||
| 17 | IL_4V9F_075 | 4V9F | 0.1321 | 1 | Minor groove platform | 0 | LSU rRNA | U | 2473 | C | 2475 | C | 2476 | * | G | 2111 | A | 2112 | cSH | cWW | cWW | |
| 18 | IL_4WF9_081 | 4WF9 | 0.1600 | 1 | Minor groove platform | X | LSU rRNA | U | 2465 | C | 2467 | C | 2468 | * | G | 2097 | A | 2098 | cSH | cWW | cWW | |
| 19 | IL_9DFE_081 | 9DFE | 0.1487 | 1 | Minor groove platform | 1A | LSU rRNA | U | 2438 | C | 2440 | C | 2441 | * | G | 2070 | A | 2071 | cSH | cWW | cWW | |
| 20 | IL_8GLP_131 | 8GLP | 0.1650 | 1 | Minor groove platform (H) | L5 | LSU rRNA | U | 4384 | C | 4386 | C | 4387 | * | G | 3916 | A | 3917 | cSH | cWW | cWW | |
| 21 | IL_8B0X_143 | 8B0X | 0.1408 | 1 | a | LSU rRNA | U | 2442 | C | 2444 | U | 2445 | * | A | 2074 | A | 2075 | cSH | cWW | cWW | ||
| 22 | IL_7A0S_076 | 7A0S | 0.1505 | 1 | Minor groove platform | X | LSU rRNA | U | 2417 | C | 2419 | C | 2420 | * | G | 2053 | A | 2054 | cSH | cWW | cWW | |
| 23 | IL_9E6Q_078 | 9E6Q | 0.2130 | 1 | Minor groove platform (H) | 1 | LSU rRNA | U | 2552 | C | 2554 | OMC | 2555 | * | G | 2190 | A | 2191 | cSH | cWW | cWW | |
| 24 | IL_8GLP_292 | 8GLP | 0.2369 | 0 | Minor groove platform (H) | L5 | LSU rRNA | U | 1790 | U | 1791 | PSU | 1792 | * | A | 1737 | A | 1738 | cSH | cWW | tHS | cWW |
| 25 | IL_4R4V_001 | 4R4V | 0.3090 | 0 | Minor groove platform | A | VS ribozyme RNA | U | 777 | U | 778 | A | 779 | * | U | 607 | G | 608 | cWW | cWW | ||
| 26 | IL_9AXU_024 | 9AXU | 0.4389 | 0 | 2 | LSU rRNA | G | 807 | U | 808 | U | 809 | * | A | 783 | C | 784 | ncSH | cWW | cWW | ||
| 27 | IL_3K0J_002 | 3K0J | 0.4529 | 0 | Minor groove platform related | E | TPP riboswitch (THI element) | C | 18 | C | 19 | U | 20 | * | A | 35 | G | 36 | ncSH | cWW | cWW | |
| 28 | IL_7TZS_003 | 7TZS | 0.4290 | 0 | Minor groove platform related | X | TPP riboswitch (THI element) | C | 23 | C | 24 | U | 25 | * | A | 35 | G | 36 | ncSH | cWW | cWW | |
| 29 | IL_9E6Q_055 | 9E6Q | 0.4539 | 0 | 1 | LSU rRNA | C | 1499 | A | 1500 | C | 1501 | * | G | 1488 | G | 1489 | cSH | cWW | cWW | ||
| 30 | IL_8B0X_067 | 8B0X | 0.3375 | 0 | Minor groove platform (H) | a | LSU rRNA | U | 434 | C | 435 | C | 436 | * | G | 43 | A | 44 | cSH | cWW | cWW | |
| 31 | IL_9DFE_348 | 9DFE | 0.4511 | 0 | Minor groove platform | 1A | LSU rRNA | U | 434 | C | 435 | C | 436 | * | G | 42 | A | 43 | cSH | cWW | cWW | |
| 32 | IL_7A0S_003 | 7A0S | 0.4336 | 0 | Minor groove platform | X | LSU rRNA | U | 447 | C | 448 | C | 449 | * | G | 42 | A | 43 | cSH | cWW | cWW | |
| 33 | IL_9E6Q_003 | 9E6Q | 0.4277 | 0 | 1 | LSU rRNA | G | 466 | U | 467 | C | 468 | * | G | 35 | C | 36 | cSH | cWW | cWW | ||
| 34 | IL_12CJ_004 | 12CJ | 0.4058 | 0 | B | DGR-1B | U | 18 | C | 19 | G | 20 | * | C | 36 | A | 37 | cSH | cWW | cWW | ||
| 35 | IL_12CI_006 | 12CI | 0.5303 | 0 | B | DGR-1A aptamer | U | 20 | C | 21 | G | 22 | * | C | 38 | A | 39 | cSH | cWW | cWW | ||
| 36 | IL_4PWD_008 | 4PWD | 0.7482 | 0 | Single bulged A | T+P | RNA (27-mer) | A | 715 | A | 715|||A | A | 716 | * | DT | 812 | DT | 813 | cWW | cWW | ||
| 37 | IL_8T29_003 | 8T29 | 0.5704 | 0 | Single bulged A | R | RNA (90-MER) | C | 54 | A | 55 | A | 56 | * | U | 65 | G | 66 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UACC*GA | 9 |
| CAC*GG | 7 |
| UCC*GA | 7 |
| CCU*AG | 2 |
| UCG*CA | 2 |
| GAU*AC | 1 |
| CUUG*CG | 1 |
| UACU*AA | 1 |
| UAC(OMC)*GA | 1 |
| UU(PSU)*AA | 1 |
| UUA*UG | 1 |
| GUU*AC | 1 |
| GUC*GC | 1 |
| AAA*TT | 1 |
| CAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C* | 11 |
| AC* | 11 |
| A* | 10 |
| U* | 4 |
| UU* | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (14)
- (11)
- Minor groove platform (H) (8)
- Minor groove platform related (2)
- Single bulged A (2)
- Basepair signature
- cWW-cSH-cWW
- Heat map statistics
- Min 0.05 | Avg 0.41 | Max 0.88
Coloring options: