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Motif IL_98469.1 Version IL_98469.1 of this group appears in releases 4.10 to 4.12

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-21-52-53-4
1 IL_8T29_0038T290.57040Single bulged ARRNA (90-MER)C54A55A56*U65G66cWWcWW
2 IL_4PWD_0084PWD0.74820Single bulged AT+PRNA (27-mer)A715A715|||AA716*DT812DT813cWWcWW
3 IL_12CI_00612CI0.53030BDGR-1A aptamerU20C21G22*C38A39cSHcWWcWW
4 IL_12CJ_00412CJ0.40580BDGR-1BU18C19G20*C36A37cSHcWWcWW
5 IL_9E6Q_0039E6Q0.427701 LSU rRNAG466U467C468*G35C36cSHcWWcWW
6 IL_7A0S_0037A0S0.43360Minor groove platformX LSU rRNAU447C448C449*G42A43cSHcWWcWW
7 IL_9DFE_3489DFE0.45110Minor groove platform1A LSU rRNAU434C435C436*G42A43cSHcWWcWW
8 IL_8B0X_0678B0X0.33750Minor groove platform (H)a LSU rRNAU434C435C436*G43A44cSHcWWcWW
9 IL_9E6Q_0559E6Q0.453901 LSU rRNAC1499A1500C1501*G1488G1489cSHcWWcWW
10 IL_7TZS_0037TZS0.42900Minor groove platform relatedXTPP riboswitch (THI element)C23C24U25*A35G36ncSHcWWcWW
11 IL_3K0J_0023K0J0.45290Minor groove platform relatedETPP riboswitch (THI element)C18C19U20*A35G36ncSHcWWcWW
12 IL_9AXU_0249AXU0.438902 LSU rRNAG807U808U809*A783C784ncSHcWWcWW
13 IL_4R4V_0014R4V0.30900Minor groove platformAVS ribozyme RNAU777U778A779*U607G608cWWcWW
14 IL_8GLP_2928GLP0.23690Minor groove platform (H)L5 LSU rRNAU1790U1791PSU1792*A1737A1738cSHcWWtHScWW
15 IL_9E6Q_0789E6Q0.21301Minor groove platform (H)1 LSU rRNAU2552C2554OMC2555*G2190A2191cSHcWWcWW
16 IL_7A0S_0767A0S0.15051Minor groove platformX LSU rRNAU2417C2419C2420*G2053A2054cSHcWWcWW
17 IL_9DFE_0819DFE0.14871Minor groove platform1A LSU rRNAU2438C2440C2441*G2070A2071cSHcWWcWW
18 IL_8GLP_1318GLP0.16501Minor groove platform (H)L5 LSU rRNAU4384C4386C4387*G3916A3917cSHcWWcWW
19 IL_8B0X_1438B0X0.14081a LSU rRNAU2442C2444U2445*A2074A2075cSHcWWcWW
20 IL_4V9F_0754V9F0.13211Minor groove platform0 LSU rRNAU2473C2475C2476*G2111A2112cSHcWWcWW
21 IL_4WF9_0814WF90.16001Minor groove platformX LSU rRNAU2465C2467C2468*G2097A2098cSHcWWcWW
22 IL_9H3G_1039H3G0.08181A LSU rRNAU2806C2808C2809*G2410A2411cSHcWWcWW
23 IL_9AXU_0889AXU0.07041Minor groove platform (H)2 LSU rRNAU2902C2904C2905*G2500A2501cSHcWWcWW
24 IL_8OI5_0968OI50.07601Minor groove platform (H)1 LSU rRNAU2779C2781C2782*G2390A2391cSHcWWcWW
25 IL_9PN5_0919PN50.00001A1 LSU rRNAU2807C2809C2810*G2412A2413cSHcWWcWW
26 IL_7A0S_0287A0S0.13120Minor groove platformX LSU rRNAU925C926C927*G875A876ncSHcWWcWW
27 IL_4V9F_0344V9F0.17220Minor groove platform0 LSU rRNAU1009C1010C1011*G956A957cSHcWWcWW
28 IL_4WF9_0324WF90.18550Minor groove platformX LSU rRNAU958C959C960*G907A908cSHcWWcWW
29 IL_9DFE_0279DFE0.15280Minor groove platform1A LSU rRNAU913C914C915*G862A863cSHcWWcWW
30 IL_8OI5_0178OI50.18911Minor groove platform (H)1 LSU rRNAC439U440G442*C487G488cSHcWWtHScWW
31 IL_4LFB_0384LFB0.23900Minor groove platformA SSU rRNAC1226A1227C1228*G953G954cWWntHScWW
32 IL_8B0X_0418B0X0.51240A SSU rRNAC1226A1227C1228*G953G954cWWcWW
33 IL_9PN5_1999PN50.53380B5 SSU rRNAC1459A1460C1461*G1178G1179cWWcWW
34 IL_9H3G_2149H3G0.52240h1 SSU rRNAC1462A1463C1464*G1179G1180cWWcWW
35 IL_8GLP_2548GLP0.52580Minor groove platform (H)S2 SSU rRNAC1521A1522C1523*G1235G1236cWWcWW
36 IL_8CRE_4478CRE0.53300Minor groove platformCM SSU rRNAC1445A1446C1447*G1163G1164cWWcWW
37 IL_3IWN_0013IWN0.43700Minor groove platformACyclic di-GMP-I riboswitchG89A90U91*A2C3ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UACC*GA9
UCC*GA7
CAC*GG7
UCG*CA2
CCU*AG2
CAA*UG1
AAA*TT1
GUC*GC1
GUU*AC1
UUA*UG1
UU(PSU)*AA1
UAC(OMC)*GA1
UACU*AA1
CUUG*CG1
GAU*AC1
Non-Watson-Crick part of the motif
SequenceCounts
C*11
AC*11
A*10
U*4
UU*1

Release history

Release4.104.114.12
Date2026-05-202026-06-172026-07-15
StatusNew id, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (14)
  • (11)
  • Minor groove platform (H) (8)
  • Minor groove platform related (2)
  • Single bulged A (2)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.05 | Avg 0.41 | Max 0.88
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