IL_11KH_062

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

11KH|1|18|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_062 not in the Motif Atlas

Homologous match to IL_9PN5_203

Geometric discrepancy: 0.1161

The information below is about IL_9PN5_203

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

11KH|1|18|G|1325
11KH|1|18|U|1326
11KH|1|18|G|1327
*
11KH|1|18|C|1502
11KH|1|18|C|1503

Current chains

Chain 18

18S rRNA

Nearby chains

Chain CC

40S ribosomal protein S10

Chain S3

Small ribosomal subunit protein uS3

Chain XX

40S ribosomal protein S29