Motif IL_97561.7 Version IL_97561.7 of this group appears in releases 4.10 to 4.10

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	3-4
1	IL_3IWN_003	3IWN	1.4555	Major groove intercalation	A	Cyclic di-GMP-I riboswitch	C	42	U	43	C	44	*	G	81	G	82	cWW	cWW
2	IL_3MXH_003	3MXH	1.4576	Major groove intercalation	R	Cyclic di-GMP-I riboswitch	C	52	U	53	C	54	*	G	86	G	87	cWW	cWW
3	IL_5LYS_008	5LYS	1.2329	Single bulged U	B	7SK RNA	C	62	U	63	G	64	*	C	45	G	46	cWW	cWW
4	IL_9H3G_006	9H3G	1.0939		3+A	5.8S rRNA + LSU rRNA	G	156	U	157	G	158	*	C	5	C	6	cWW	cWW
5	IL_9AXU_122	9AXU	0.9995		2	LSU rRNA	G	3441	U	3442	A	3443	*	U	3464	C	3465	cWW	cWW
6	IL_9PN5_011	9PN5	0.6211		A1	LSU rRNA	G	189	U	190	U	191	*	A	204	C	205	cWW	cWW
7	IL_9AXU_012	9AXU	0.6378	Single bulged U (H)	2	LSU rRNA	G	196	U	197	U	198	*	A	211	C	212	cWW	cWW
8	IL_4V9F_013	4V9F	0.5809	Single bulged U	0	LSU rRNA	G	307	U	308	C	309	*	G	322	C	323	cWW	cWW
9	IL_8OI5_013	8OI5	0.6389	Single bulged U (H)	1	LSU rRNA	G	188	U	189	U	190	*	A	203	C	204	cWW	cWW
10	IL_8GLP_016	8GLP	0.6101	Single bulged U (H)	L5	LSU rRNA	G	199	U	200	C	201	*	G	214	C	215	cWW	cWW
11	IL_9H3G_016	9H3G	0.5768		A	LSU rRNA	G	186	U	187	U	188	*	G	201	C	202	cWW	cWW
12	IL_9E6Q_017	9E6Q	0.5501	Single bulged U (H)	1	LSU rRNA	G	328	U	329	G	330	*	C	343	C	344	cWW	cWW
13	IL_9AXU_031	9AXU	0.6337	Single bulged U (H)	2	LSU rRNA	C	905	U	906	G	907	*	C	918	G	919	cWW	cWW
14	IL_9PN5_032	9PN5	0.6616		A1	LSU rRNA	C	873	U	874	G	875	*	C	886	G	887	cWW	cWW
15	IL_8GLP_061	8GLP	0.6510	Single bulged U (H)	L5	LSU rRNA	C	1590	U	1591	G	1592	*	C	1603	G	1604	cWW	cWW
16	IL_8OI5_035	8OI5	0.6477	Single bulged U (H)	1	LSU rRNA	C	869	U	870	G	871	*	C	882	G	883	cWW	cWW
17	IL_9H3G_038	9H3G	0.6429		A	LSU rRNA	C	882	U	883	G	884	*	C	895	G	896	cWW	cWW
18	IL_9E6Q_031	9E6Q	0.6756	Single bulged U (H)	1	LSU rRNA	C	859	U	860	G	861	*	OMC	872	G	873	cWW	cWW
19	IL_4V9F_029	4V9F	0.6195	Single bulged U	0	LSU rRNA	G	834	U	835	G	836	*	C	847	C	848	cWW	cWW
20	IL_8GLP_209	8GLP	0.6328		S2	SSU rRNA	G	327	U	328	G	329	*	C	322	C	323	cWW	cWW
21	IL_9PN5_158	9PN5	1.0071		B5	SSU rRNA	G	279	U	280	G	281	*	C	275	C	276	cWW	cWW
22	IL_8CRE_407	8CRE	0.7694	Single bulged U (H)	CM	SSU rRNA	G	277	U	278	G	279	*	C	273	C	274	cWW	cWW
23	IL_5FQ5_002	5FQ5	0.7275	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
24	IL_5B2T_002	5B2T	0.7338	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
25	IL_7QR0_002	7QR0	0.7352	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
26	IL_7QQX_002	7QQX	0.7309	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
27	IL_7QQP_002	7QQP	0.7283	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
28	IL_5VW1_002	5VW1	0.7506	Single bulged U	C	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
29	IL_8KAJ_003	8KAJ	0.7723		I	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	cWW
30	IL_8KAL_003	8KAL	0.7233	Single bulged U	A	tracrRNA	G	58	U	59	C	60	*	G	54	C	55	cWW	ncWW
31	IL_9I0V_005	9I0V	0.5257		C	A SELEX-derived artificial RNA aptamer	G	19	U	20	G	21	*	C	15	C	16	cWW	cWW
32	IL_8VMA_002	8VMA	0.7185	Single bulged U	C	Enterovirus 5' cloverleaf cis-acting replication element	G	40	U	41	G	42	*	C	36	C	37	cWW	cWW
33	IL_8VMB_001	8VMB	0.5664	Single bulged U	R	Enterovirus 5' cloverleaf cis-acting replication element	G	40	U	41	G	42	*	C	36	C	37	cWW	cWW
34	IL_8OI5_127	8OI5	0.4828	Single bulged U (H)	1	LSU rRNA	G	3283	U	3284	A	3285	*	U	3352	C	3353	cWW	cWW
35	IL_9AXU_118	9AXU	0.4709	Single bulged U (H)	2	LSU rRNA	G	3419	U	3420	G	3421	*	C	3488	C	3489	cWW	cWW
36	IL_9PN5_121	9PN5	0.4572		A1	LSU rRNA	G	3197	U	3198	G	3199	*	C	3193	C	3194	cWW	cWW
37	IL_8B0X_117	8B0X	0.4796		a	LSU rRNA	G	1461	U	1462	C	1463	*	G	1452	C	1453	cWW	cWW
38	IL_3SNP_004	3SNP	0.6199	Single bulged U	D	IRE	G	18	U	19	U	20	*	A	13	C	14	cWW	cWW
39	IL_7A0S_035	7A0S	0.6025	Single bulged U	X	LSU rRNA	A	1022	U	1023	G	1024	*	C	1160	U	1161	cWW	cWW
40	IL_9PN5_048	9PN5	0.5268		A1	LSU rRNA	A	1180	U	1181	A	1182	*	U	1324	U	1325	cWW	cWW
41	IL_9AXU_047	9AXU	0.4944	Single bulged U (H)	2	LSU rRNA	A	1211	U	1212	G	1213	*	C	1355	U	1356	cWW	cWW
42	IL_8B0X_099	8B0X	0.4572	Single bulged U (H)	a	LSU rRNA	G	1013	U	1014	C	1015	*	G	1151	C	1152	cWW	cWW
43	IL_4WF9_038	4WF9	0.4744	Single bulged U	X	LSU rRNA	A	1055	U	1056	A	1057	*	U	1193	U	1194	cWW	cWW
44	IL_9E6Q_044	9E6Q	0.4114	Single bulged U (H)	1	LSU rRNA	G	1131	U	1132	G	1133	*	C	1275	C	1276	cWW	cWW
45	IL_4V9F_039	4V9F	0.3932	Single bulged U	0	LSU rRNA	G	1108	U	1109	G	1110	*	C	1253	C	1254	cWW	cWW
46	IL_8OI5_053	8OI5	0.3928	Single bulged U (H)	1	LSU rRNA	A	1176	U	1177	G	1178	*	C	1320	U	1321	cWW	cWW
47	IL_9H3G_056	9H3G	0.3659		A	LSU rRNA	C	1189	U	1190	G	1191	*	C	1334	G	1335	cWW	cWW
48	IL_9DFE_037	9DFE	0.3870	Single bulged U	1A	LSU rRNA	G	1011	U	1012	C	1013	*	G	1149	C	1150	cWW	cWW
49	IL_9PN5_126	9PN5	0.4707		A1	LSU rRNA	G	3318	U	3319	A	3320	*	U	3387	C	3388	cWW	cWW
50	IL_8OI5_065	8OI5	0.6289	Single bulged U (H)	1	LSU rRNA	G	1556	U	1557	G	1558	*	C	1573	C	1574	cWW	cWW
51	IL_9E5O_004	9E5O	0.5658		B	RNA (76-MER)	G	21	U	22	G	23	*	C	37	C	38	cWW	cWW
52	IL_9H3G_147	9H3G	0.5714		C3	5S rRNA	U	62	U	63	G	64	*	C	15	A	16	cWW	cWW
53	IL_2PJP_001	2PJP	0.4747	Single bulged U	B	SECIS RNA	G	16	U	17	U	18	*	A	29	C	30	cWW	cWW
54	IL_9H3G_186	9H3G	0.3079		h1	SSU rRNA	G	559	U	560	C	561	*	G	588	C	589	cWW	cWW
55	IL_2OIU_003	2OIU	0.4506	Single bulged U	Q	L1 Ribozyme RNA Ligase	G	18	U	19	U	20	*	A	41	C	42	cWW	cWW
56	IL_3D2V_001	3D2V	0.4008	Single bulged U	A	TPP riboswitch (THI element)	G	73	U	74	G	75	*	C	5	C	6	cWW	cWW
57	IL_4LFB_014	4LFB	0.3922	Single bulged U	A	SSU rRNA	U	367	U	368	C	369	*	G	392	A	393	cWW	cWW
58	IL_8B0X_016	8B0X	0.3939		A	SSU rRNA	U	367	U	368	G	369	*	C	392	A	393	cWW	cWW
59	IL_9H3G_178	9H3G	0.3615		h1	SSU rRNA	U	441	U	442	A	443	*	U	465	A2M	466	cWW	cWW
60	IL_8GLP_326	8GLP	0.3716	Single bulged U (H)	S2	SSU rRNA	U	487	U	488	A	489	*	U	511	A2M	512	cWW	cWW
61	IL_9PN5_164	9PN5	0.3734		B5	SSU rRNA	U	439	U	440	A	441	*	U	463	A	464	cWW	cWW
62	IL_8CRE_413	8CRE	0.3720	Single bulged U (H)	CM	SSU rRNA	U	437	U	438	A	439	*	U	461	A	462	cWW	cWW
63	IL_8GLP_222	8GLP	0.2550		S2	SSU rRNA	G	606	U	607	C	608	*	G	635	C	636	cWW	cWW
64	IL_9AXU_001	9AXU	0.3520		4+2	5.8S rRNA	G	158	U	159	G	160	*	C	7	C	8	cWW	cWW
65	IL_9H3G_025	9H3G	0.2615		A	LSU rRNA	G	547	U	548	G	549	*	C	528	C	529	cWW	cWW
66	IL_9H3G_102	9H3G	0.3323		A	LSU rRNA	OMG	2407	OMU	2408	U	2409	*	A	2810	C	2811	cWW	cWW
67	IL_9PN5_090	9PN5	0.3355		A1	LSU rRNA	G	2409	U	2410	U	2411	*	A	2811	C	2812	cWW	cWW
68	IL_8OI5_095	8OI5	0.3458	Single bulged U (H)	1	LSU rRNA	G	2387	U	2388	U	2389	*	A	2783	C	2784	cWW	cWW
69	IL_8GLP_130	8GLP	0.2892	Single bulged U (H)	L5	LSU rRNA	G	3913	U	3914	U	3915	*	A	4388	C	4389	cWW	cWW
70	IL_9AXU_087	9AXU	0.3179	Single bulged U (H)	2	LSU rRNA	G	2497	U	2498	U	2499	*	A	2906	C	2907	cWW	cWW
71	IL_9DFE_080	9DFE	0.3392	Single bulged U	1A	LSU rRNA	G	2067	U	2068	G	2069	*	C	2442	C	2443	cWW	cWW
72	IL_8B0X_182	8B0X	0.3867	Single bulged U (H)	a	LSU rRNA	G	2071	U	2072	G7M	2073	*	C	2446	C	2447	cWW	cWW
73	IL_9E6Q_077	9E6Q	0.4252	Single bulged U (H)	1	LSU rRNA	A	2187	U	2188	G	2189	*	C	2556	U	2557	cWW	cWW
74	IL_4V9F_074	4V9F	0.4451	Single bulged U	0	LSU rRNA	A	2108	U	2109	G	2110	*	C	2477	U	2478	cWW	cWW
75	IL_7A0S_075	7A0S	0.4039	Single bulged U	X	LSU rRNA	G	2050	U	2051	G	2052	*	C	2421	C	2422	cWW	cWW
76	IL_4WF9_080	4WF9	0.4172	Single bulged U	X	LSU rRNA	G	2094	U	2095	G	2096	*	C	2469	C	2470	cWW	cWW
77	IL_4FRG_002	4FRG	0.5025	Single bulged U	B	Cobalamin riboswitch	G	23	U	24	G	25	*	C	39	C	40	cWW	cWW
78	IL_8F5G_001	8F5G	0.4718	Single bulged U	D	RNA	A	5	U	6	C	7	*	G	21	U	22	cWW	cWW
79	IL_9E6Q_048	9E6Q	0.4691		1	LSU rRNA	G	1310	U	1311	G	1312	*	C	1291	C	1292	cWW	cWW
80	IL_9H3G_239	9H3G	0.5831		h1	SSU rRNA	U	1658	U	1659	G	1660	*	U	1747	A	1748	cWW	cWW
81	IL_8CRE_472	8CRE	0.6053	Single bulged U (H)	CM	SSU rRNA	U	1643	U	1644	G	1645	*	U	1730	A	1731	cWW	cWW
82	IL_8GLP_280	8GLP	0.5629		S2	SSU rRNA	U	1720	U	1721	G	1722	*	U	1812	A	1813	cWW	cWW
83	IL_9PN5_226	9PN5	0.5660		B5	SSU rRNA	U	1656	U	1657	G	1658	*	U	1743	A	1744	cWW	cWW
84	IL_9AXU_054	9AXU	0.5536	Single bulged A (H)	2	LSU rRNA	U	1419	U	1420	G	1421	*	C	1454	A	1455	cWW	cWW
85	IL_4LFB_046	4LFB	0.4988	Single bulged U	A	SSU rRNA	C	1195	U	1196	G	1197	*	C	1060	G	1061	cWW	cWW
86	IL_9PN5_051	9PN5	0.4796		A1	LSU rRNA	G	1207	U	1208	G	1209	*	C	1296	C	1297	cWW	cWW
87	IL_8GLP_013	8GLP	0.5607		L5	LSU rRNA	C	183	U	184	C	185	*	G	253	G	254	cWW	cWW
88	IL_7PMM_002	7PMM	0.6925	Single bulged U	D	RNA (45mer) containing HP92 of the 23S rRNA	A	15	U	16	A	17	*	U	31	U	32	cWW	cWW
89	IL_9AXU_114	9AXU	0.5446	Single bulged A (H)	2	LSU rRNA	G	3271	U	3272	A	3273	*	U	3311	C	3312	cWW	cWW
90	IL_2PN3_003	2PN3	0.4951	Single bulged U	B+A	RNA (20-mer)	G	105	U	106	G	107	*	U	61	C	62	cWW	cWW
91	IL_8OI5_056	8OI5	0.3034	Single bulged U (H)	1	LSU rRNA	G	1203	U	1204	G	1205	*	C	1292	C	1293	cWW	cWW
92	IL_8GLP_081	8GLP	0.3623	Single bulged U (H)	L5	LSU rRNA	G	1946	U	1947	G	1948	*	C	2035	C	2036	cWW	cWW
93	IL_9H3G_059	9H3G	0.3698		A	LSU rRNA	G	1217	U	1218	G	1219	*	C	1306	C	1307	cWW	cWW
94	IL_7VTI_004	7VTI	0.3909	Single bulged U	B	crRNA	G	21	U	22	G	23	*	C	14	C	15	cWW	cWW
95	IL_3MEI_001	3MEI	0.3871	Single bulged U	B+A	RNA (23-mer)	C	15	U	16	G	17	*	C	7	G	8	cWW	cWW
96	IL_8CRE_451	8CRE	0.4759	Single bulged U (H)	CM	SSU rRNA	G	1253	U	1254	G	1255	*	C	1426	C	1427	cWW	cWW
97	IL_8GLP_333	8GLP	0.4254	Single bulged U (H)	S2	SSU rRNA	G	1325	UY1	1326	G	1327	*	C	1502	C	1503	cWW	cWW
98	IL_9H3G_218	9H3G	0.4191		h1	SSU rRNA	G	1269	OMU	1270	G	1271	*	C	1443	C	1444	cWW	cWW
99	IL_9PN5_203	9PN5	0.4237		B5	SSU rRNA	G	1268	U	1269	G	1270	*	C	1440	C	1441	cWW	cWW
100	IL_8B0X_044	8B0X	0.4797		A	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209	cWW	cWW
101	IL_4LFB_042	4LFB	0.5109	Single bulged U	A	SSU rRNA	G	1048	U	1049	G	1050	*	C	1208	C	1209	cWW	cWW
102	IL_9E6Q_111	9E6Q	0.4173	Single bulged U (H)	2	5S rRNA	C	90	U	91	C	92	*	G	99	G	100	cWW	cWW
103	IL_4V9F_107	4V9F	0.4227	Single bulged U	9	5S rRNA	G	86	U	87	G	88	*	C	95	C	96	cWW	cWW
104	IL_7PMQ_002	7PMQ	0.5450	Single bulged U	F	RNA (42-MER)	A	24	U	25	A	26	*	U	40	U	41	cWW	cWW
105	IL_9TKV_003	9TKV	0.2888		R	31-mer RNA hairpin with 5'pppG-C blunt end mimicking the influenza B virus vRNA promoter (panhandle)	G	5\|\|A	U	6\|\|A	A	7\|\|A	*	U	26	C	27	cWW	cWW
106	IL_9AXU_132	9AXU	0.2491	Single bulged U (H)	4	5.8S rRNA	A	97	U	98	C	99	*	G	76	U	77	cWW	cWW
107	IL_9PN5_172	9PN5	0.1436		B5	SSU rRNA	G	557	U	558	C	559	*	G	586	C	587	cWW	cWW
108	IL_8CRE_422	8CRE	0.0000	Single bulged U (H)	CM	SSU rRNA	G	555	U	556	C	557	*	G	584	C	585	cWW	cWW
109	IL_6LT7_001	6LT7	0.3330	Single bulged U	C	50-mer RNA	G	46	U	47	U	48	*	A	41	C	42	cWW	cWW
110	IL_9PN5_141	9PN5	0.2890		A4	5.8S rRNA	A	89	U	90	C	91	*	G	68	U	69	cWW	cWW
111	IL_12CI_008	12CI	0.2946		B	DGR-1A aptamer	G	63	U	64	C	65	*	G	52	C	53	cWW	cWW
112	IL_9H3G_020	9H3G	0.5331		A	LSU rRNA	U	486	U	487	C	488	*	G	447	G	448	ncWW	cWW
113	IL_9H3G_153	9H3G	0.4422	Single bulged U (H)	C3	5S rRNA	A	83	U	84	G	85	*	C	92	U	93	cWW	cWW
114	IL_9AXU_002	9AXU	0.4334	Single bulged U (H)	2+4	LSU rRNA + 5.8S rRNA	A	13	U	14	C	15	*	G	152	U	153	cWW	cWW
115	IL_9PN5_002	9PN5	0.4273		A1+A4	LSU rRNA + 5.8S rRNA	A	13	U	14	C	15	*	G	144	U	145	cWW	cWW
116	IL_8OI5_003	8OI5	0.4224	Single bulged U (H)	1+4	LSU rRNA + 5.8S rRNA	A	12	U	13	C	14	*	G	144	U	145	cWW	cWW
117	IL_8GLP_002	8GLP	0.3727	Single bulged U (H)	L5+L8	LSU rRNA + 5.8S rRNA	A	12	U	13	C	14	*	G	143	U	144	cWW	cWW
118	IL_9H3G_005	9H3G	0.3067		A+3	LSU rRNA	G	11	U	12	C	13	*	G	150	C	151	cWW	cWW
119	IL_9PN5_193	9PN5	0.3279		B5	SSU rRNA	G	1051	U	1052	G	1053	*	C	1066	C	1067	cWW	cWW
120	IL_9E6Q_041	9E6Q	0.8013		1	LSU rRNA	G	1073	U	1074	G	1075	*	U	1085	C	1086	cWW	cWW
121	IL_6M0X_002	6M0X	0.7559	Single bulged U	B	RNA (71-MER)	A	59	U	60	G	61	*	C	55	U	56	cWW	cWW
122	IL_6JDV_003	6JDV	0.8397	Single bulged U	B	CRISPR RNA direct repeat element	G	95	U	96	G	97	*	C	81	C	82	cWW	cWW
123	IL_2UWM_003	2UWM	0.8209	Single bulged U	D	RNA (23-mer)	C	25	U	26	G	27	*	C	21	G	22	cWW	cWW
124	IL_4WF9_030	4WF9	0.7260	Single bulged U	X	LSU rRNA	A	969	U	970	U	971	*	A	897	U	898	cWW	cWW
125	IL_8OI5_027	8OI5	0.7651	Single bulged U (H)	1	LSU rRNA	A	771	U	772	U	773	*	A	751	U	752	cWW	cWW
126	IL_9H3G_031	9H3G	0.7945		A	LSU rRNA	G	784	PSU	785	U	786	*	A	764	C	765	cWW	cWW
127	IL_9PN5_024	9PN5	0.7611		A1	LSU rRNA	A	775	PSU	776	U	777	*	A	755	U	756	cWW	cWW
128	IL_8K85_008	8K85	0.6977		A+B	RNA (56-MER)	U	30	U	31	G	32	*	C	20	G	21	cWW	cWW
129	IL_9E6Q_002	9E6Q	0.6363	Single bulged A (H)	1	LSU rRNA	G	473	U	474	C	475	*	G	29	C	30	cWW	cWW
130	IL_3TZR_002	3TZR	0.5038	Single bulged U	B+A	RNA (16-mer)	G	105	U	106	G	107	*	U	61	C	62	cWW	cWW
131	IL_8TQX_002	8TQX	0.7891	Single bulged U	A+D	Zika virus stem-loop A (SLA) bottom stem	G	14	U	15	A	16	*	U	4	C	5	cWW	cWW
132	IL_2ZY6_002	2ZY6	0.8442	Single bulged U	A	phenylalanyl transfer RNA	G	10	U	11	G	12	*	C	24	C	25	cWW	cWW
133	IL_6MWN_006	6MWN	0.6714	Single bulged U	B	IRES	U	659	U	660	C	661	*	G	646	A	647	cWW	cWW
134	IL_2R8S_004	2R8S	0.5939	Single bulged U	R	P4-P6 RNA RIBOZYME DOMAIN	G	129	U	130	U	131	*	A	192	C	193	cWW	cWW
135	IL_8B0X_149	8B0X	0.6614	Single bulged U (H)	a	LSU rRNA	U	2405	U	2406	C	2407	*	G	2418	G	2419	cWW	cWW
136	IL_12CI_007	12CI	0.6664		B	DGR-1A aptamer	G	47	U	48	U	49	*	A	68	C	69	cWW	cWW
137	IL_9PN5_130	9PN5	0.5742		A1	LSU rRNA	G	3340	U	3341	A	3342	*	U	3363	C	3364	cWW	cWW
138	IL_9H3G_095	9H3G	0.5463		A	LSU rRNA	C	2202	U	2203	G	2204	*	C	2235	G	2236	cWW	cWW
139	IL_6UFG_004	6UFG	0.5625	Single bulged U	A	RNA (166-MER)	U	138	U	139	C	140	*	G	153	G	154	cWW	cWW
140	IL_3CUL_007	3CUL	0.6076	Single bulged U	C	RNA (92-MER)	U	17	U	18	C	19	*	GTP	1	G	2	cWW	cWW
141	IL_8TQX_001	8TQX	0.4840	Single bulged U	D+A	Zika virus stem-loop A (SLA) bottom stem	G	14	U	15	A	16	*	U	4	C	5	cWW	cWW
142	IL_9E6Q_109	9E6Q	0.4614		2	5S rRNA	C	75	U	76	C	77	*	G	112	G	113	cWW	cWW
143	IL_7KVT_002	7KVT	0.3635	Single bulged U	B	Squash RNA aptamer bound to DFHBI-1T with iridium (III) ions	G	50	U	51	A	52	*	U	66	C	67	cWW	cWW
144	IL_3WBM_001	3WBM	0.5151	Single bulged U	X+Y	RNA (25-MER)	G	2	U	3	A	4	*	U	23	C	24	cWW	cWW
145	IL_8OI5_131	8OI5	0.5031	Single bulged U (H)	1	LSU rRNA	G	3305	U	3306	A	3307	*	U	3328	C	3329	cWW	cWW
146	IL_9AXU_050	9AXU	0.3612	Single bulged U (H)	2	LSU rRNA	G	1238	U	1239	G	1240	*	C	1327	C	1328	cWW	cWW
147	IL_6UFH_004	6UFH	0.4692	Single bulged U	A	RNA (167-MER)	U	139	U	140	C	141	*	G	154	G	155	cWW	cWW
148	IL_9H3G_068	9H3G	0.5029		A	LSU rRNA	C	1583	U	1584	U	1585	*	A	1546	G	1547	cWW	cWW
149	IL_8GLP_095	8GLP	0.4668		L5	LSU rRNA	C	2768	U	2769	C	2770	*	G	2549	G	2550	cWW	cWW
150	IL_9AXU_119	9AXU	0.5607	Single bulged U (H)	2	LSU rRNA	U	3482	U	3483	G	3484	*	C	3425	G	3426	cWW	cWW
151	IL_9PN5_064	9PN5	0.5730		A1	LSU rRNA	U	1820	U	1821	C	1822	*	G	1623	G	1624	cWW	cWW
152	IL_9PN5_127	9PN5	0.6193		A1	LSU rRNA	U	3381	U	3382	G	3383	*	C	3324	G	3325	cWW	cWW
153	IL_7KKV_001	7KKV	0.6612	Single bulged U	B	OLE* RNA	U	497	U	498	U	499	*	A	506	G	507	cWW	cWW
154	IL_2A64_002	2A64	0.3942	Single bulged U	A	RNase P class B	G	51	U	52	C	53	*	G	395	C	396	cWW	cWW
155	IL_8B0X_146	8B0X	0.5643	Single bulged U (H)	a	LSU rRNA	U	2206	U	2207	G	2208	*	U	2224	G	2225	cWW	cWW
156	IL_4O26_001	4O26	0.5848	Single bulged U	E	Telomerase TR	G	181	U	182	C	183	*	G	193	C	194	cWW	cWW
157	IL_2A64_003	2A64	0.5775	Single bulged U	A	RNase P class B	G	66	U	67	G	68	*	C	77	C	78	cWW	cWW
158	IL_6JQ5_003	6JQ5	0.5555	Single bulged U	A	Hatchet ribozyme	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
159	IL_6JQ5_006	6JQ5	0.5631	Single bulged U	B	Hatchet ribozyme	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
160	IL_6JQ6_006	6JQ6	0.5746	Single bulged U	U	Hatchet ribozyme	A	38	U	39	C	40	*	G	55	U	56	cWW	cWW
161	IL_9H3G_018	9H3G	0.7191		A	LSU rRNA	C	636	U	637	C	638	*	G	430	G	431	cWW	cWW
162	IL_9H3G_072	9H3G	0.6963		A	LSU rRNA	C	1822	U	1823	C	1824	*	G	1624	G	1625	ncWW	cWW
163	IL_8OI5_128	8OI5	0.8261	Single bulged U (H)	1	LSU rRNA	U	3346	U	3347	G	3348	*	C	3289	G	3290	cWW	cWW
164	IL_4KZD_001	4KZD	1.0116	Single bulged U	R	RNA (84-MER)	C	74	U	75	G	76	*	C	10	G	11	cWW	cWW
165	IL_3W3S_002	3W3S	1.0419	Single bulged U	B	Selenocysteine transfer RNA	G	43	U	43\|\|\|A	G	44	*	C	26	C	27	cWW	cWW
166	IL_4WF9_088	4WF9	0.9054	Single bulged U	X	LSU rRNA	U	2428	U	2429	C	2430	*	G	2441	G	2442	cWW	cWW
167	IL_9AXU_056	9AXU	0.9707		2	LSU rRNA	U	1432	U	1433	G	1434	*	U	1445	G	1446	cWW	cWW
168	IL_8K85_005	8K85	1.0460		B+A	RNA (56-MER)	U	30	U	31	G	32	*	C	20	G	21	cWW	cWW
169	IL_9H3G_069	9H3G	1.3447		A	LSU rRNA	C	1563	U	1564	G	1565	*	C	1549	G	1550	cWW	cWW
170	IL_7A0S_079	7A0S	1.3810	Single bulged U	X	LSU rRNA	U	2197	U	2198	C	2199	*	G	2186	A	2187	cWW	cWW
171	IL_4C7O_001	4C7O	0.8817	Single bulged U	E	SRP RNA	G	38	U	39	A	40	*	U	7	C	8	cWW	cWW
172	IL_1S03_005	1S03	1.1859	Single bulged U	B	47-MER	A	6	U	7	G	8	*	C	41	U	42	cWW	cWW
173	IL_1S03_001	1S03	1.1764	Single bulged U	A	47-MER	A	6	U	7	G	8	*	C	41	U	42	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUG*CC	39
GUC*GC	22
CUG*CG	13
GUU*AC	13
GUA*UC	12
AUC*GU	10
AUG*CU	9
CUC*GG	8
UUC*GG	6
UUG*CG	5
AUA*UU	4
UUG*UA	4
UUG*CA	3
UUC*GA	3
GUG*UC	3
UUA*U(A2M)	2
UUA*UA	2
AUU*AU	2
UUG*UG	2
GUU*GC	1
CUG*(OMC)G	1
(OMG)(OMU)U*AC	1
GU(G7M)*CC	1
G(UY1)G*CC	1
G(OMU)G*CC	1
G(PSU)U*AC	1
A(PSU)U*AU	1
UUC*(GTP)G	1
CUU*AG	1
UUU*AG	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*	168
(OMU)*	2
(PSU)*	2
(UY1)*	1

Release history

Release	4.10
Date	2026-05-20
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged U (65)
(61)
Single bulged U (H) (42)
Single bulged A (H) (3)
Major groove intercalation (2)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.03 | Avg 0.78 | Max 2.05

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Coloring options: Nucleotide numbers

Motif IL_97561.7 Version IL_97561.7 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_97561.7 Version IL_97561.7 of this group appears in releases 4.10 to 4.10

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