IL_11KH_063
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 11KH|1|18|C|1331, 11KH|1|18|U|1494, 11KH|1|18|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_063 not in the Motif Atlas
- Homologous match to IL_9H3G_220
- Geometric discrepancy: 0.1349
- The information below is about IL_9H3G_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.2
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
11KH|1|18|U|1329
11KH|1|18|G|1330
11KH|1|18|C|1331
11KH|1|18|A|1332
11KH|1|18|U|1333
11KH|1|18|G|1334
11KH|1|18|G|1335
*
11KH|1|18|U|1492
11KH|1|18|C|1493
11KH|1|18|U|1494
11KH|1|18|G|1495
11KH|1|18|U|1496
11KH|1|18|G|1497
11KH|1|18|A|1498
11KH|1|18|U|1499
11KH|1|18|G|1500
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S10
- Chain LA
- La-related protein 1
- Chain OO
- 40S ribosomal protein S20
- Chain S3
- Small ribosomal subunit protein uS3
- Chain XX
- 40S ribosomal protein S29
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