IL_11KH_066

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_066 not in the Motif Atlas

Homologous match to IL_9H3G_224

Geometric discrepancy: 0.3173

The information below is about IL_9H3G_224

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

11KH|1|18|C|1363
11KH|1|18|U|1364
11KH|1|18|G|1365
*
11KH|1|18|C|1374
11KH|1|18|G|1375

Current chains

Chain 18

18S rRNA

Nearby chains

Chain RS

40S ribosomal protein S17

Chain UU

eS26