IL_11KH_079
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_079 not in the Motif Atlas
- Homologous match to IL_9PN5_225
- Geometric discrepancy: 0.095
- The information below is about IL_9PN5_225
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
11KH|1|18|C|1717
11KH|1|18|G|1718
11KH|1|18|A|1719
11KH|1|18|U|1720
*
11KH|1|18|A|1813
11KH|1|18|G|1814
11KH|1|18|A|1815
11KH|1|18|G|1816
Current chains
- Chain 18
- 18S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- eL41
Coloring options: