IL_11KH_110

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

11KH|1|28|G|666, 11KH|1|28|A|667, 11KH|1|28|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_110 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1328

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.1

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

11KH|1|28|G|487
11KH|1|28|G|488
*
11KH|1|28|C|665
11KH|1|28|G|666
11KH|1|28|A|667
11KH|1|28|C|668
11KH|1|28|C|669

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain Q

Large ribosomal subunit protein eL18

Chain gg

60S ribosomal protein L28