IL_11KH_133

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_133 not in the Motif Atlas

Homologous match to IL_9AXU_025

Geometric discrepancy: 0.0884

The information below is about IL_9AXU_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

11KH|1|28|C|1520
11KH|1|28|C|1521
11KH|1|28|G|1522
*
11KH|1|28|C|1655
11KH|1|28|U|1656
11KH|1|28|G|1657

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L4

60S ribosomal protein L4

Chain dd

60S ribosomal protein L27a