IL_11KH_143
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_143 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1968
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
11KH|1|28|C|1732
11KH|1|28|G|1733
11KH|1|28|G|1734
11KH|1|28|U|1735
11KH|1|28|A|1736
11KH|1|28|A|1737
*
11KH|1|28|U|1792
11KH|1|28|A|1793
11KH|1|28|A|1794
11KH|1|28|A|1795
11KH|1|28|U|1796
11KH|1|28|G|1797
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 20
- Large ribosomal subunit protein eL20
- Chain 21
- 60S ribosomal protein L21
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain L7
- 60S ribosomal protein L7
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