Motif IL_46203.1 Version IL_46203.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 3-4 | 3-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_291 | 8GLP | 0.0000 | 0 | L5 | LSU rRNA | C | 1732 | G | 1733 | G | 1734 | U | 1735 | A | 1736 | A | 1737 | * | PSU | 1792 | A | 1793 | A | 1794 | A | 1795 | U | 1796 | G | 1797 | cWW | cWB | cSH | tWH | tHS | cWW | ||
| 2 | IL_8EPK_004 | 8EPK | 0.8318 | 3 | F | RNA (31-MER) | CFZ | 21 | OMU | 22 | G | 23 | OMC | 24 | CFZ | 25 | UFT | 26 | * | A2M | 5 | CFZ | 6 | UFT | 7 | A2M | 8 | A2M | 10 | OMG | 13 | cWW | tWH | ntSH | ntWS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGUAA*(PSU)AAAUG | 1 |
| (CFZ)(OMU)G(OMC)(CFZ)(UFT)*(A2M)(CFZ)(UFT)(A2M)(UFT)(A2M)(CFZ)(CFZ)(OMG) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGUA*AAAU | 1 |
| (OMU)G(OMC)(CFZ)*(CFZ)(UFT)(A2M)(UFT)(A2M)(CFZ)(CFZ) | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.83 | Avg 0.42 | Max 0.83
Coloring options: