IL_11KH_146
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_146 not in the Motif Atlas
- Homologous match to IL_9PN5_040
- Geometric discrepancy: 0.141
- The information below is about IL_9PN5_040
- Detailed Annotation
- Tandem non-canonical cWW pairs; U in syn
- Broad Annotation
- Tandem non-canonical cWW pairs; U in syn
- Motif group
- IL_71194.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 43
Unit IDs
11KH|1|28|A|1746
11KH|1|28|U|1747
11KH|1|28|U|1748
11KH|1|28|A|1749
*
11KH|1|28|U|1781
11KH|1|28|U|1782
11KH|1|28|C|1783
11KH|1|28|U|1784
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 10
- Ribosomal protein L10
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
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