IL_11KH_166
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_166 not in the Motif Atlas
- Homologous match to IL_8GLP_300
- Geometric discrepancy: 0.0744
- The information below is about IL_8GLP_300
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
11KH|1|28|G|2358
11KH|1|28|U|2359
11KH|1|28|A|2360
11KH|1|28|G|2361
11KH|1|28|U|2362
11KH|1|28|A|2363
11KH|1|28|G|2364
*
11KH|1|28|C|3858
11KH|1|28|G|3859
11KH|1|28|A|3860
11KH|1|28|A|3861
11KH|1|28|A|3862
11KH|1|28|C|3863
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 17
- 60S ribosomal protein L17
- Chain L4
- 60S ribosomal protein L4
Coloring options: