IL_8GLP_300

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_300 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0726

The information below is about IL_8P9A_289

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8GLP|1|L5|G|2358
8GLP|1|L5|U|2359
8GLP|1|L5|A|2360
8GLP|1|L5|G|2361
8GLP|1|L5|U|2362
8GLP|1|L5|A2M|2363
8GLP|1|L5|OMG|2364
*
8GLP|1|L5|C|3858
8GLP|1|L5|G|3859
8GLP|1|L5|A|3860
8GLP|1|L5|A|3861
8GLP|1|L5|A|3862
8GLP|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17