IL_11KH_174

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCC*GUGAG

Length

8 nucleotides

Bulged bases

11KH|1|28|A|2725

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_174 not in the Motif Atlas

Geometric match to IL_9H3G_015

Geometric discrepancy: 0.2511

The information below is about IL_9H3G_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70784.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

11KH|1|28|C|2613
11KH|1|28|C|2614
11KH|1|28|C|2615
*
11KH|1|28|G|2722
11KH|1|28|U|2723
11KH|1|28|G|2724
11KH|1|28|A|2725
11KH|1|28|G|2726

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 19

60S ribosomal protein L19

Chain 34

60S ribosomal protein L34