IL_11KH_184
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 11KH|1|28|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_184 not in the Motif Atlas
- Homologous match to IL_8GLP_108
- Geometric discrepancy: 0.0799
- The information below is about IL_8GLP_108
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.3
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
11KH|1|28|C|2867
11KH|1|28|G|2868
11KH|1|28|U|2869
11KH|1|28|A|2870
11KH|1|28|A|2871
11KH|1|28|C|2872
*
11KH|1|28|G|2877
11KH|1|28|G|2878
11KH|1|28|A|2879
11KH|1|28|U|2880
11KH|1|28|A|2881
11KH|1|28|A|2882
11KH|1|28|G|2883
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 18
- Small subunit ribosomal RNA; SSU rRNA
- Chain 41
- eL41
- Chain ff
- 60S ribosomal protein L37a
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