IL_8GLP_108

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8GLP|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_108 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0627

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8GLP|1|L5|C|2867
8GLP|1|L5|G|2868
8GLP|1|L5|U|2869
8GLP|1|L5|A|2870
8GLP|1|L5|A|2871
8GLP|1|L5|C|2872
*
8GLP|1|L5|G|2877
8GLP|1|L5|G|2878
8GLP|1|L5|A|2879
8GLP|1|L5|U|2880
8GLP|1|L5|A|2881
8GLP|1|L5|A|2882
8GLP|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA