IL_11KH_186

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_186 not in the Motif Atlas

Homologous match to IL_9PN5_079

Geometric discrepancy: 0.1377

The information below is about IL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18824.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

11KH|1|28|G|2896
11KH|1|28|G|2897
*
11KH|1|28|C|3602
11KH|1|28|G|3603
11KH|1|28|A|3604
11KH|1|28|C|3605

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 18

Small subunit ribosomal RNA; SSU rRNA

Chain 19

60S ribosomal protein L19