IL_11KH_204

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

11KH|1|28|A|4203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_204 not in the Motif Atlas

Homologous match to IL_8GLP_137

Geometric discrepancy: 0.0601

The information below is about IL_8GLP_137

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

11KH|1|28|G|4191
11KH|1|28|A|4192
*
11KH|1|28|U|4202
11KH|1|28|A|4203
11KH|1|28|C|4204

Current chains

Chain 28

28S rRNA

Nearby chains

Chain 10

Ribosomal protein L10

Chain 21

60S ribosomal protein L21

Chain 29

Large ribosomal subunit protein eL29

Chain 42

eL42

Chain IF

IFRD2