IL_11KH_223
3D structure
- PDB id
- 11KH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_11KH_223 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.097
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
11KH|1|28|C|4596
11KH|1|28|U|4597
11KH|1|28|C|4598
11KH|1|28|A|4599
11KH|1|28|G|4600
11KH|1|28|U|4601
11KH|1|28|A|4602
11KH|1|28|C|4603
*
11KH|1|28|G|4608
11KH|1|28|G|4609
11KH|1|28|A|4610
11KH|1|28|A|4611
11KH|1|28|C|4612
11KH|1|28|C|4613
11KH|1|28|G|4614
Current chains
- Chain 28
- 28S rRNA
Nearby chains
- Chain 23
- 60S ribosomal protein L23
- Chain 40
- Large ribosomal subunit protein eL40
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9
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