IL_11KH_230

3D structure

PDB id

11KH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S with IFRD2 and LARP1, 40S head-swiveled

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

11KH|1|28|C|4772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_11KH_230 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3002

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

11KH|1|28|G|4769
11KH|1|28|U|4770
11KH|1|28|C|4771
11KH|1|28|C|4772
11KH|1|28|C|4773
*
11KH|1|28|G|4862
11KH|1|28|G|4863
11KH|1|28|U|4864
11KH|1|28|C|4865

Current chains

Chain 28

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L9

Chain bb

Large ribosomal subunit protein uL13