Motif IL_37443.2 Version IL_37443.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9PN5_223 | 9PN5 | 0.3955 | 1 | B5 | SSU rRNA | A | 1753 | A | 1754 | A | 1755 | G | 1757 | * | C | 1644 | G | 1645 | C | 1646 | U | 1647 | cWW | cWWa | ncWW | cWW | |
| 2 | IL_8GLP_277 | 8GLP | 0.2986 | 1 | S2 | SSU rRNA | A | 1822 | A | 1823 | A | 1824 | G | 1826 | * | C | 1708 | G | 1709 | C | 1710 | U | 1711 | cWW | cWWa | cWW | ||
| 3 | IL_4EYA_010 | 4EYA | 0.2715 | 0 | Tandem non-canonical cWW pairs | m+n | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | ncWW |
| 4 | IL_4EYA_008 | 4EYA | 0.2100 | 0 | Tandem non-canonical cWW pairs | l+k | RNA (12-mer) | C | 6 | U | 7 | U | 8 | G | 9 | * | C | 6 | U | 7 | U | 8 | G | 9 | cWW | ncwW | ncwW | cWW |
| 5 | IL_9H3G_166 | 9H3G | 0.1591 | 0 | h1 | SSU rRNA | C | 147 | C | 148 | G | 149 | U | 150 | * | A | 160 | G | 161 | A2M | 162 | G | 163 | cWW | cWW | cWH | cWW | |
| 6 | IL_3WBM_002 | 3WBM | 0.0000 | 0 | Tandem non-canonical cWW pairs | X+Y | RNA (25-MER) | A | 10 | C | 11 | C | 12 | C | 13 | * | G | 14 | A | 15 | C | 16 | U | 17 | cWW | ncWB | ncWW | cWW |
| 7 | IL_8CRE_401 | 8CRE | 0.2003 | 0 | CM | SSU rRNA | C | 147 | C | 148 | G | 149 | U | 150 | * | A | 160 | G | 161 | A | 162 | G | 163 | cWW | ncWWa | cWH | cWW | |
| 8 | IL_7R9F_001 | 7R9F | 0.3543 | 0 | B | RNA (18-mer) | C | 5 | G | 6 | G | 7 | G | 8 | * | C | 5||||8_555 | G | 6||||8_555 | G | 7||||8_555 | G | 8||||8_555 | cWW | cWW | |||
| 9 | IL_1CSL_001 | 1CSL | 0.3513 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW | |
| 10 | IL_7WIE_001 | 7WIE | 0.2842 | 0 | V | THF-II riboswitch (folE RNA) | G | 49 | A | 50 | G | 51 | A | 52 | * | U | 10 | G | 11 | G | 12 | U | 13 | cWW | cWW | cWH | cWW | |
| 11 | IL_8GLP_337 | 8GLP | 0.3691 | 1 | S2 | SSU rRNA | OMG | 1447 | A | 1448 | G | 1449 | G | 1450 | * | C | 1395 | A | 1396 | G | 1398 | C | 1399 | cWW | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAG*CGCU | 2 |
| CUUG*CUUG | 2 |
| CCGU*AG(A2M)G | 1 |
| ACCC*GACU | 1 |
| CCGU*AGAG | 1 |
| CGGG*CGGG | 1 |
| GGUAC*GGGC | 1 |
| GAGA*UGGU | 1 |
| (OMG)AGG*CAUGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*GC | 2 |
| UU*UU | 2 |
| CG*G(A2M) | 1 |
| CC*AC | 1 |
| CG*GA | 1 |
| GG*GG | 1 |
| GUA*GG | 1 |
| AG*GG | 1 |
| AG*AUG | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Tandem non-canonical cWW pairs (3)
- Basepair signature
- cWW-cWW-L-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.32 | Max 0.58
Coloring options: